Biology NER with BioBERT to Extract Diseases and Chemicals.

Biology Named Entity Recognition with BioBERT

tl;dr A step-by-step tutorial to train a BioBERT model for named entity recognition (NER), extracting diseases and chemical on the BioCreative V CDR task corpus. Our model is #3-ranked and within 0.6 percentage points of the state-of-the-art. Practical Machine Learning - Learn Step-by-Step to Train a Model A great way to learn is by going step-by-step through the process of training and evaluating the model. Hit the Open in Colab button below to launch a Jupyter Notebook in the cloud with a step-by-step walkthrough....

December 30, 2020 · 6 min · Eugene
AlphaFold2 performance on the global distance test. Retrieved from the official AlphaFold2 video.

AlphaFold2 - 10 Things You Should Know About Biology's ImageNet Moment

tl;dr AlphaFold2, an AI program developed by DeepMind, completely blew away the competition in a protein-structure prediction competition, CASP, so much so, the co-founder of the competition has commented that “in some sense” the 50-year old problem, is solved. 1. What is protein folding? A protein’s function is determined by its structure, its 3D shape. The process, protein folding, is how a protein chain acquires this 3D shape and structure....

December 7, 2020 · 7 min · Eugene